Lab8- New Primer Information
Primer information
Primer Pair |
Contig # |
Repeat sequence unit |
Left Seq. |
Right Seq. |
Exp. Frag. Size (bp) |
Lowest Tm(°C) |
1 |
31898 |
AG |
GCAATGATGACTGCCTTTGA |
TGCAAATTAACGTAAGTGAGAGTCA |
186 |
58.4 |
2 |
34449 |
AG |
TTCAGGTTTTCTTTATCCATTTGA |
TTTCTCCATTTCTCCATTTCTACA |
127 |
56 |
3 |
259859 |
AAG |
TCTCCTTCCTCTAATACCTCTACTCC |
TCATTGATGTGGGTAAGAATGAG |
292 |
53.4 |
4 |
255505 |
AAAT |
GTTGCTCAGCTCCAAGCTCT |
TGCAATACGCAAATCATTTTAT |
127 |
59.2 |
5 |
37894 |
AAG |
CGAGCTCTCACAGGTAAATTTCT |
AACCGCATAGGTGTCTCTGG |
177 |
61 |
6 |
50628 |
AAAT |
GGATTTGTTTCTGTTTACGGAGT |
ATCCATGACGTCGGGATAAT |
124 |
58.4 |
7 |
67295 |
AG |
AGGTTGCAGAAGGAGGCTCT |
CCGTCCTGGAGCCATATCT |
142 |
62.3 |
8 |
94421 |
AAGAGG |
TGAATGGTGTTAAAACTAATGAACAA |
TCACAGAATTACAACTTTCACAGTA |
264 |
56.7 |
9 |
94990 |
ACAGAG |
CGCTGTTTGAACGTGAATTT |
CCACACTCAGTGAGAGAGAGAGAG |
199 |
56.3 |
10 |
99468 |
AAAT |
TTATCAGTGATCTGAAGACACCTC |
AGTTCGACTATTATGAGTGCGTTA |
173 |
59.4 |
11 |
107719 |
ACAT |
GAGCTTTTATTCAACTTGCATTG |
TAGCAAGATTCCACCCGAAC |
111 |
57.4 |
12 |
120552 |
AAAT |
TTCGTGATAATCCTATCTGTGATTT |
TGGTTGATCGGTGTAAAACTTG |
300 |
58 |
13 |
121086 |
AAG |
GTCCGGAGCAGATAAAGCAA |
GTGTAAAGATGCTCTTGCTAACG |
150 |
60.4 |
14 |
121429 |
AAG |
TGTTAAACTCGCGTTTGTGG |
CCGTCAAAACTGCGTCATAG |
127 |
58.4 |
15 |
125823 |
AATT |
TTCTGTAAGCATCCTAAATGCAA |
AGGTGACCAATTGTTTGGAA |
136 |
56.3 |
16 |
132879 |
ACAG |
GCCTTTTTCTGTTTACTAACAGTTCA |
ATCGTTTGATGCCGGCATTA |
209 |
58.4 |
17 |
141545 |
ACAT |
GGTCTCACACATCCGCAATA |
TGACCAACATACGATTTTCTTCAC |
131 |
59.4 |
18 |
143022 |
ACAG |
TCTACATAACGAAAATCCTGTCG |
GAAGAACGCCAACAGACAGA |
200 |
59.2 |
19 |
143214 |
AG |
CTCTGTCTCGATCTCTCTTTGC |
TCATTATTGATTTGCATTACAGAAA |
146 |
54.7 |
20 |
170737 |
ACAG |
AACGGTTACTGAGATTACGAAGC |
ACGAAAATCCACGTCACTCA |
119 |
58.4 |
21 |
171469 |
ACTAGT |
CCGTACGCTGGAAGAAAAGA |
TGGAGTTATCGACCGTACCA |
204 |
60.4 |
22 |
182441 |
AATC |
TTTTGTAGTTTGTTTTTATATCTGCA |
AGGTTGGTCATGGGGTTGAT |
181 |
55.5 |
23 |
197614 |
AAG |
GCTTGACGCGTAGTTGTGAA |
CAAAAGAACGACGTAAACACG |
188 |
58.7 |
24 |
210923 |
AG |
TGTCTGACGTTTGACGTTCC |
AAATCGGGTGACTGAGTTT |
136 |
56.7 |
25 |
227899 |
ACAG |
CAGCGGTTACTGAGATTAGATGG |
CGAAAATCCACATCACTCATTT |
237 |
57.1 |
26 |
229686 |
AAGGTC |
AATGTATGTTCTGGAGGAGCAA |
GGTTTGATTCCTAGTTGAGGATTT |
174 |
58.9 |